Nynke Dekker Explained
Nynke Hester Dekker (pronounced as /nl/; born 2 April 1971) is a Dutch biophysicist who since 2024 has been Professor of Biophysics at the Department of Physics, University of Oxford.[1] Before this she was Professor of Molecular Biophysics at the Kavli Institute of Nanoscience at Delft University of Technology. Dekker studies individual DNA and RNA molecules and how they interact with proteins in bacteria, viruses and eukaryotes. She described how virus proteins build errors into the virus RNA of viruses. In 2020, she was awarded the Spinoza Prize.
Early life and education
Dekker, daughter of a United Nations staff member, was born in Amsterdam.[2] She studied physics and applied mathematics in the United States.[3] In 1993, she received her bachelor's degree from Yale University where she worked alongside Mark A. Reed in applied physics. She was a graduate student at Leiden University, where she graduated in physics. In 1996, she received her master's degree in atomic physics from Harvard University. At Harvard, she completed her doctorate in nanotechnology, designing microchips that contained caesium atoms. She moved to Paris as a postdoctoral researcher at the École normale supérieure.
Research and career
In 2002, Dekker moved to Delft University of Technology, where she was made full professor in 2008. Her research considers fundamental biological processes. Cellular function involves DNA replication, a robust biological mechanism with a low error rate. Dekker looks to understand the action of molecules and proteins essential for cellular processes (e.g. copying and translating DNA, repairing errors). Her early work investigated the enzyme Type I topoisomerase, which is involved in the replication of DNA and RNA.[4]
Dekker has developed a broad range of single-molecule techniques and nanoanalytical probes, including magnetic and optical tweezers and nanopores.[5] In particular, she developed new capabilities for optical tweezers, including the ability to measure torque.[6]
Dekker spent 2015 on sabbatical at the Francis Crick Institute, where she decided to switch focus to the complex biomolecular processes involved with chromatin replication, which was supported by a ERC Advanced Grant in 2018. Nuclei containing cells called Eukaryotes contain chromatin, a complex of DNA and proteins, which must also be replicated.
Dekker has uncovered how virus proteins insert errors into the viral RMA, which enable viral mutation that protects them from an evolving environment. She was awarded the Spinoza Prize in 2020 for her molecular-level studies of how chemotherapy kills cancer cells.[7]
Awards and honours
Selected publications
- Liu . Z . van Veen . E . Sánchez . H . Solano . B . Palmero Moya . FJ . McCluskey . KA . Ramírez Montero . D . van Laar . T . Dekker . NH . A Biophysics Toolbox for Reliable Data Acquisition and Processing in Integrated Force-Confocal Fluorescence Microscopy. . ACS photonics . 17 April 2024 . 11 . 4 . 1592-1603 . 10.1021/acsphotonics.3c01739 . 38645993. 11027178 .
- Sánchez . H . Liu . Z . van Veen . E . van Laar . T . Diffley . JFX . Dekker . NH . A chromatinized origin reduces the mobility of ORC and MCM through interactions and spatial constraint. . Nature communications . 23 October 2023 . 14 . 1 . 6735 . 10.1038/s41467-023-42524-8 . 37872142.
- Ramírez Montero . D . Sánchez . H . van Veen . E . van Laar . T . Solano . B . Diffley . JFX . Dekker . NH . Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation. . Nature communications . 14 April 2023 . 14 . 1 . 2082 . 10.1038/s41467-023-37093-9 . 37059705.
- Janissen . R . Woodman . A . Shengjuler . D . Vallet . T . Lee . KM . Kuijpers . L . Moustafa . IM . Fitzgerald . F . Huang . PN . Perkins . AL . Harki . DA . Arnold . JJ . Solano . B . Shih . SR . Vignuzzi . M . Cameron . CE . Dekker . NH . Induced intra- and intermolecular template switching as a therapeutic mechanism against RNA viruses. . Molecular cell . 4 November 2021 . 81 . 21 . 4467-4480.e7 . 10.1016/j.molcel.2021.10.003 . 34687604. 8628313 .
- Sánchez . H . McCluskey . K . van Laar . T . van Veen . E . Asscher . FM . Solano . B . Diffley . JFX . Dekker . NH . DNA replication origins retain mobile licensing proteins. . Nature communications . 26 March 2021 . 12 . 1 . 1908 . 10.1038/s41467-021-22216-x . 33772005. 7998030 .
- Kaczmarczyk . A . Meng . H . Ordu . O . Noort . JV . Dekker . NH . Chromatin fibers stabilize nucleosomes under torsional stress. . Nature communications . 8 January 2020 . 11 . 1 . 126 . 10.1038/s41467-019-13891-y . 31913285. 6949304 .
- Janissen . R . Arens . MMA . Vtyurina . NN . Rivai . Z . Sunday . ND . Eslami-Mossallam . B . Gritsenko . AA . Laan . L . de Ridder . D . Artsimovitch . I . Dekker . NH . Abbondanzieri . EA . Meyer . AS . Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription. . Cell . 23 August 2018 . 174 . 5 . 1188-1199.e14 . 10.1016/j.cell.2018.06.049 . 30057118. 6108918 .
- Koster . DA . Palle . K . Bot . ES . Bjornsti . MA . Dekker . NH . Antitumour drugs impede DNA uncoiling by topoisomerase I. . Nature . 12 July 2007 . 448 . 7150 . 213-7 . 10.1038/nature05938 . 17589503.
- Koster . DA . Croquette . V . Dekker . C . Shuman . S . Dekker . NH . Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. . Nature . 31 March 2005 . 434 . 7033 . 671-4 . 10.1038/nature03395 . 15800630.
Notes and References
- Web site: Professor Nynke Dekker joins University of Oxford . Department of Physics . . 21 October 2024.
- Web site: 2018-04-17 . Eleven AcademiaNet members receive ERC Advanced Grants .
- Web site: About Nynke Dekker – Nynke Dekker Lab . 2023-06-11 . en-US.
- Web site: ESF EURYI award winner aims to stop cancer cells reading their own DNA : European Science Foundation . 2023-06-11 . archives.esf.org.
- Web site: Nynke Dekker wins Physica Prize 2023 . 2023-06-11 . TU Delft . en-US.
- Web site: A life-long curiosity driven by substantive questions NWO . 2023-06-11 . www.nwo.nl . en.
- Web site: Spinoza Prize for TU Delft biophysicist Nynke Dekker . 2023-06-11 . www.delta.tudelft.nl . nl.
- Web site: Prof. Nynke Dekker NWO . 2023-06-11 . www.nwo.nl . en.
- Web site: Stafford2007-08-01T16:10:00+01:00 . Ned . Young scientists win million-Euro prizes . 2023-06-11 . Chemistry World . en.
- Web site: FYSICA 2014: winner of EPS Emmy Noether Distinction Nynke Dekker will give a lecture – European Physical Society (EPS) . 2023-06-11 . www.eps.org.
- Web site: ERC Grants voor Nynke Dekker en Ibo van de Poel . 2023-06-11 . TU Delft . nl-NL.
- Web site: Nynke Dekker verkozen tot lid van EMBO . 2023-06-11 . TU Delft . nl-NL.