| Club: | MSV Duisburg |
| Season: | 2016–17 |
| Manager: | Iliya Gruev |
| League: | 3. Liga |
| League Result: | 1st |
| Cup1: | DFB-Pokal |
| Cup1 Result: | First round |
| Cup2: | Lower Rhine Cup |
| Cup2 Result: | Winners |
| League Topscorer: | Kingsley Onuegbu (11) |
| Season Topscorer: | Kingsley Onuegbu (17) |
| Highest Attendance: | 24,182 |
| Lowest Attendance: | 10,443 |
| Average Attendance: | 14,176 |
| Pattern La1: | _duisburg1617h |
| Pattern B1: | _duisburg1617h |
| Pattern Ra1: | _duisburg1617h |
| Pattern Sh1: | _duisburg1617h |
| Leftarm1: | FFFFFF |
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| Pattern B2: | _duisburg1617a |
| Leftarm2: | 000000 |
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| Pattern B3: | _duisburg1617t |
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| Prevseason: | 2015–16 |
| Nextseason: | 2017–18 |
The 2016–17 MSV Duisburg season was the 117th season in the club's football history. In 2016–17 the club played in the 3. Liga, the third tier of German football after being relegated.[1]
Times from 29 July to 29 October 2016 and from 26 March to 20 May 2017 are UTC+2, from 30 October 2016 to 25 March 2017 UTC+1.
See main article: article and 2016–17 DFB-Pokal.
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| Rank | Player | Position | 3. Liga | DFB-Pokal | Lower Rhine Cup | Total | ||
|---|---|---|---|---|---|---|---|---|
| 1 |  Kingsley Onuegbu | 11 | 0 | 7 | 18 | |||
| 2 |  Stanislav Iljutcenko | 8 | 1 | 4 | 13 | |||
| 3 | Simon Brandstetter | 4 | 0 | 5 | 9 | |||
| 4 | Zlatko Janjić | 6 | 0 | 0 | 6 | |||
| 5 | Andreas Wiegel | 4 | 0 | 1 | 5 | |||
| align=center rowspan=2 | 6 | Dustin Bomheuer | 4 | 0 | 0 | align=center rowspan=2 | 4 | |
| Fabian Schnellhardt | 3 | 0 | 1 | |||||
| align=center rowspan=2 | 8 |  Tuğrul Erat | 2 | 0 | 1 | align=center rowspan=2 | 3 | |
 Enis Hajri | 2 | 0 | 1 | |||||
| align=center rowspan=4 | 10 | Tim Albutat | 2 | 0 | 0 | align=center rowspan=4 | 2 | |
 Branimir Bajić | 2 | 0 | 0 | |||||
| Ahmet Engin | 1 | 0 | 1 | |||||
| Kevin Wolze | 1 | 0 | 1 | |||||
| align=center rowspan=3 | 14 | Thomas Bröker | 1 | 0 | 0 | align=center rowspan=3 | 1 | |
| Martin Dausch | 0 | 0 | 1 | |||||
| Mark Flekken | 1 | 0 | 0 | |||||
| align=center colspan=3 | Own goals | 1 | 0 | 0 | 1 | |||
| align=center colspan=3 | Total | 52 | 1 | 24 | 77 |
| Rank | Name | 3. Liga | DFB-Pokal | Lower Rhine Cup | Total | |
|---|---|---|---|---|---|---|
| 1 | Mark Flekken | 15 | 0 | 1 | 16 | |
| 2 | Marcel Lenz | 1 | 0 | 3 | 4 | |
| Total | 16 | 0 | 4 | 20 | ||