The men's 10,000 metres event at the 2006 World Junior Championships in Athletics was held in Beijing, China, at Chaoyang Sports Centre on 16 August.
| Gold | Ibrahim Jeylan | |
| Silver | Joseph Ebuya | |
| Bronze | Aadam Ismaeel Khamis |
16 August
| Rank | Name | Nationality | Time | Notes | |||
|---|---|---|---|---|---|---|---|
| align=left | align=left | | 28:53.29 | ||||
| align=left | align=left | | 28:53.46 | ||||
| align=left | align=left | | 28:54.30 | ||||
| 4 | align=left | align=left |  | 28:58.09 | |||
| 5 | align=left | align=left |  | 28:59.92 | |||
| 6 | align=left | align=left | | 29:04.46 | |||
| 7 | align=left | align=left |  | 29:18.76 | |||
| 8 | align=left | align=left |  | 29:19.25 | |||
| 9 | align=left | align=left |  | 29:33.98 | |||
| 10 | align=left | align=left |  | 29:47.96 | |||
| 11 | align=left | align=left | | 29:50.81 | |||
| 12 | align=left | align=left |  | 30:04.38 | |||
| 13 | align=left | align=left | | 30:08.98 | |||
| 14 | align=left | align=left | | 30:20.32 | |||
| 15 | align=left | align=left | | 30:52.22 | |||
| 16 | align=left | align=left |  | 31:04.85 | |||
| 17 | align=left | align=left |  | 31:38.22 | |||
| 18 | align=left | align=left |  | 33:53.40 | |||
| align=left | align=left | | DQ | IAAF rule 163.3 | |||
| align=left | align=left | | DQ | IAAF rule 163.3 | |||
| align=left | align=left |  | DNF | ||||
| align=left | align=left |  | DNF | ||||
| align=left | align=left |  | DNF |
According to an unofficial count, 23 athletes from 16 countries participated in the event.