| Year: | 1999 |
| Conference: | SWAC |
| Division: | I |
| Gender: | Men's |
| Teams: | 8 |
| 1Stroundarena: | Campus Sites |
| Semiarena: | F. G. Clark Activity Center |
| Semicity: | Baton Rouge, Louisiana |
| Finalarena: | F. G. Clark Activity Center |
| Finalcity: | Baton Rouge, Louisiana |
| Champions: | Alcorn State |
| Titlecount: | 5th |
| Coach: | Davey Whitney |
| Coachcount: | 5th |
The 1999 SWAC men's basketball tournament was held March 3–5, 1999. The quarterfinal round was held at the home arena of the higher-seeded team, while the semifinal and championship rounds were held at the F. G. Clark Activity Center in Baton Rouge, Louisiana.[1] Alcorn State defeated, 89–83 in the championship game.[2] The Braves received the conference's automatic bid to the 1999 NCAA tournament as No. 15 seed in the West Region.[3]